Table 1

Features of the in silico genome-scale metabolic model of K. oxytoca
Features Number
Genome feature
  Genome size (base pairs, bp)
    Chromosome 1 5,974,109 (56.05)a
  No. of open reading frames (ORFs)
    Chromosome 1 5,488
In silico metabolic model
  No. of reactions (redundant) included in the model 1,457
   No. of biochemical reactions 1,228
    No. of transport reactions 229
  No. of reactions (unique) included in the model 1,437
  No. of metabolites 1,099
  No. of ORFs assigned in metabolic network 1,074
  ORF coverageb (%) 19.57

aThe parenthesis includes the value of G + C content (%).

bThe number of ORFs participated in the KoxGSC1457 model divided by the total number of ORFs in the K. oxytoca genome.

Park et al.

Park et al. Microbial Cell Factories 2013 12:20   doi:10.1186/1475-2859-12-20

Open Data