Complete gene expression profiling of Saccharopolyspora erythraea using GeneChip DNA microarrays

doi:10.1186/1475-2859-6-37

Microbial Cell Factories

Volume 6

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Peano C
Bicciato S
Corti G
Ferrari F
Rizzi E
Bonnal RJ
Bordoni R
Albertini A
Bernardi LR
Donadio S
De Bellis G

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Peano C
Bicciato S
Corti G
Ferrari F
Rizzi E
Bonnal RJ
Bordoni R
Albertini A
Bernardi LR
Donadio S
De Bellis G
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Complete gene expression profiling of Saccharopolyspora erythraea using GeneChip DNA microarrays

Clelia Peano¹ , Silvio Bicciato² , Giorgio Corti¹ , Francesco Ferrari³ , Ermanno Rizzi¹ , Raoul JP Bonnal¹ , Roberta Bordoni¹ , Alberto Albertini¹ , Luigi Rossi Bernardi⁴ , Stefano Donadio⁵ and Gianluca De Bellis¹

¹Institute for Biomedical Technologies, National Research Council, Milan, Italy

²Department of Chemical Engineering Processes, University of Padova, Padova, Italy

³Department of Biomedical Sciences, University of Modena and Reggio Emilia, Modena, Italy

⁴University of Milan, Department of Biomedical Sciences and Technologies, Milan, Italy

⁵KtedoGen, Milan, Italy

author email corresponding author email

Microbial Cell Factories 2007, 6:37doi:10.1186/1475-2859-6-37


Published:	26 November 2007

Additional files

Additional file 1:

List of the genes belonging to the categories IV.1 and IV.2 (Function unknown and General function prediction, respectively) among the top 404, which gave significant similarity with protein or domains from S. coelicolor and/or S. avermitilis

Format: DOC Size: 94KB Download file

This file can be viewed with: Microsoft Word Viewer

Additional file 2:

Analysis of functional categories. dChip visualization of the expression pattern along the growth time course of all the genes belonging to the I.6 and III.5 functional categories. The clusters of genes with a transcription trend significantly increased during phase A (from 12 h to 20 h) and decreased in phase B(from 32 h to 52 h) and in phase C (from 56 h to 72 h) are evidenced by coloured squared boxes.

Format: PNG Size: 580KB Download file

Additional file 3:

Analysis of functional categories. dChip visualization of the expression pattern along the growth time course of all the genes belonging to the II.12, and III.8 functional categories. The clusters of genes with a transcription trend significantly increased during phase A (from 12 h to 20 h) and decreased in phase B(from 32 h to 52 h) and in phase C (from 56 h to 72 h) are evidenced by coloured squared boxes.

Format: PNG Size: 447KB Download file